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Agilent Protein Identification Solutions

Agilent Protein Identification Solutions
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Agilent Protein Identification Solutions

Product catalog summary
Overview
Agilent Technologies provides a comprehensive suite of tools for protein identification from complex biological samples, focusing on addressing challenges such as the presence of thousands of proteins with varying abundances, particularly low-abundance proteins.
Integrated Workflow
The protein identification workflow is divided into four main steps: Sample Preparation, Sample Separation, Sample Analysis, and Sample Identification, each supported by specific Agilent products and technologies.
Sample Preparation
  • Includes reagents, kits, and accessories like spin filters, multiple affinity removal systems, and protein in-gel tryptic digestion kits.
  • Technologies such as the mRP-C18 column enhance protein recovery and identification.
Sample Separation
  • Agilent offers the HPLC-Chip/MS system and Nanoflow-LC system for superior sample separations.
  • The HPLC-Chip/MS system integrates nanoflow LC and MS components into a microfluidic chip, reducing leaks and improving chromatographic performance.
  • The Nanoflow-LC system supports one-dimensional and two-dimensional separations, providing flexibility for various workflows.
Sample Analysis
  • Agilent's mass spectrometry tools include nanospray and MALDI sources for high sensitivity and throughput.
  • The nanospray source offers attomole-level sensitivity, while the MALDI source is ideal for high-throughput analysis of well-separated samples.
Sample Identification
  • Agilent's MSn performance is designed for exceptional sensitivity and specificity, crucial for identifying low-abundance proteins.
  • The XCT Ultra ion trap enhances performance by acquiring more scans, aiding in the identification of lower-abundance peptides.
Conclusion
Agilent Technologies provides a robust and integrated approach to protein identification, offering tools and systems that enhance performance, reduce time-to-results, and improve workflow efficiency.
Overview of MSD Trap XCT Ultra
The MSD Trap XCT Ultra is a sophisticated mass spectrometry device designed for rapid and comprehensive data acquisition, supporting up to five stages of automated, data-dependent MS/MS in a single run. It utilizes SmartFrag collision-energy ramping and adjustable fragmentation width for optimal ion generation and structural information.
Data Acquisition Features
  • Static and active data acquisition for up to five stages of MS/MS.
  • SmartFrag collision-energy ramping for efficient fragmentation.
  • High-resolution scans for accurate peptide ion charge state determination.
  • Data-dependent neutral-loss mode for phosphopeptide identification.
  • Simplified data navigation with hierarchical tree structure and filters.
  • Visual Basic-driven automation for data analysis and reporting.
Performance and Sensitivity
The LC/MSD Trap XCT Ultra matches or exceeds the sensitivity and scan speed of other ion traps, combining a multipole design for increased trap capacity with a Smart Target function for optimal usage, providing high-quality results quickly, even with complex samples.
Spectrum Mill MS Proteomics Workbench
Agilent's Spectrum Mill workbench is a comprehensive suite of software tools for turning MSn data into actionable insights, offering intelligent spectral extraction, database searching, de novo sequencing, and quantitative analyses.
Protein Identification Solutions
Agilent provides integrated solutions for analyzing complex protein mixtures, including the Nanoflow Proteomics Solution for flexibility and the MALDI Proteomics Solution for high-throughput analysis.
Agilent's Integrated Biology Solutions
Agilent Technologies offers a range of life science research systems engineered for sensitivity, reproducibility, and productivity, including instrumentation, microfluidics, software, microarrays, consumables, and services for genomics, proteomics, and metabolomics applications.
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Catalog excerpts

Agilent Protein Identification Solutions-1

Integrated Biology Solutions AT A G L A N C E Agilent Technologies has developed and optimized products and solutions to address an entire range of protein identification challenges. Let our comprehensive line of protein identification tools put you on the road to faster discovery and identification of lowabundance proteins within complex samples. LC/MS solutions to discover and identify more proteins from complex samples

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Agilent Protein Identification Solutions-2

A comprehensive and integrated workflow for fast and accurate protein identification The identification of proteins from biological samples presents unique challenges. A single sample can contain thousands of proteins whose abundances vary over many orders of magnitude. Often, the proteins of most interest are present at lower abundance. Agilent Technologies offers an integrated suite of powerful tools that enables you to successfully prepare, separate, analyze, and identify your challenging protein samples. Optimized preparation products, outstanding LC separation technologies, exceptionally...

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Agilent Protein Identification Solutions-3

Protein Identification Solutions from Agilent Sample preparation technologies that optimize analytical performance By combining our proprietary reagents and consumables with our instrument systems, you can take advantage of enhanced performance, reduced time- to-results, and an improved, easier We have solutions for all stages of your sample preparation—from the removal of interfering, high-abundance serum proteins to in-gel tryptic digestion kits for effective and reproducible results. Agilent's efficient sample preparation technologies improve the consistency and reliability of your results....

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Agilent Protein Identification Solutions-4

HPLC-Chip/MS and Nanoflow-LC systems for superior sample separations No single separation technique is suitable for all protein identification studies. Some prefer the remarkable performance and ease of microfluidic chip-based separations. Others need the flexibility of nanoflow LC. That’s why Agilent offers multiple separation approaches for protein identification—so every lab can find the perfect, custom-tailored fit to identify more proteins faster and with greater confidence. The HPLC-Chip Cube interface Conventional nanoflow LC uses numerous intricate connections and requires substantial...

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Agilent Protein Identification Solutions-5

Protein Identification Solutions from Agilent The Nanoflow-LC System for MS If you have a diverse set of sample types or experimental objectives, you’ll want to consider various separation approaches. The flexibility of Agilent’s Nanoflow-LC system allows you to design a variety of separation workflows so you can apply the methods that work best in your lab and achieve exactly the separations you want. The Nanoflow-LC system can be configured for onedimensional separation, onedimensional separation with sample cleanup and enrichment, or full twodimensional separation. High-efficiency columns...

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Agilent Protein Identification Solutions-6

Exceptional MSn performance for protein sample analysis The identification of low-abundance proteins requires exceptional sensitivity and specificity. However, these requirements can certainly be met in different ways. You may prefer the convenience of online integration of microfluidic nanoflow-LC and a nanospray ion source. Or you may desire the efficiency of high-throughput analyses provided by MALDI-based MS. Perhaps another particular combination of separation and MS approaches would best suit your needs. With these possibilities in mind, Agilent provides multiple approaches to help you...

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Agilent Protein Identification Solutions-7

Protein Identification Solutions from Agilent LC/MSD Trap XCT Ultra ion trap MS The LC/MSD Trap XCT Ultra consistently matches or exceeds the sensitivity and scan speed of other three-dimensional ion traps and two-dimensional, linear ion traps. For optimal sensitivity, the XCT Ultra combines a multipole design that increases trap capacity and a Smart Target function that maximizes trap capacity usage. At the same time, it retains the resolution and scan speed advantages inherent in a true three-dimensional ion trap. Faster scanning helps identify more peptides Advanced capabilities for easier,...

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Agilent Protein Identification Solutions-8

Powerful software tools identify more proteins quickly High quality data is necessary, but not sufficient. It takes the right software tools to turn good data into useful, relevant informa- tion. Agilent offers the Spectrum Mill MS proteomics workbench, a comprehensive suite of software tools that turn your MSn data into answers. The Spectrum Mill workbench provides • Intelligent spectral extraction and quality assessment • Database searching and de novo • Automated and interactive results • Cross-experiment result summaries • Multiple options including MS/MS search for MS/MS spectra and peptide...

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Agilent Protein Identification Solutions-9

Protein Identification Solutions from Agilent Quantitative as well as qualitative The Spectrum Mill workbench can com- pare relative protein abundances based on mean peak intensities of all the com- ponent peptides from a protein; this method can reveal two- to five-fold changes in relative abundances. When you need more precise quantitation, the Spectrum Mill workbench fully supports stable isotope and other labeling experi- De novo spectral interpretation for peptides not found in any database The de novo sequencing algorithm uses advanced graph theory to generate a ranked list of potential...

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Agilent Protein Identification Solutions-10

Protein identification solutions from Agilent Our protein identification solutions combine Agilent’s advanced tools for protein analysis into integrated solutions for analyzing complex mixtures of proteolytically digested proteins. Whether you require convenient, flexible, or high-throughput analyses, we provide a direct solution that delivers high performance. Agilent HPLC-Chip/MS protein identification solution for performance and ease Agilent Nanoflow proteomics solution for flexibility Agilent MALDI proteomics solution for high-throughput analysis Identify more proteins more quickly and with...

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Agilent Protein Identification Solutions-11

Protein Identification Solutions from Agilent Protein ID solution products Spin Filters Multiple Affinity Removal Systems* Spin Concentrators Protein In-gel Tryptic Digestion kit Peptide Cleanup C18 spin tubes and pipette tips MALDI-MS Matrices Peptide and Protein standards HPLC-Chip Cube MS interface Agilent 1100 Series Nanoflow LC System for MS Autosampler cooling Agilent orthogonal nanospray source Agilent PDF-MALDI source Agilent LC/MSD Trap XCT Ultra Micro fraction collector/plate spotter Spectrum Mill MS Proteomics Workbench Protocols for sample preparation and MS analysis Familiarization/troubleshooting...

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